IL_6UZ7_046

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_046 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1248

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6UZ7|1|2|G|1110
6UZ7|1|2|G|1111
6UZ7|1|2|A|1112
6UZ7|1|2|G|1113
6UZ7|1|2|U|1114
6UZ7|1|2|A|1115
6UZ7|1|2|U|1116
6UZ7|1|2|G|1117
*
6UZ7|1|2|U|1128
6UZ7|1|2|G|1129
6UZ7|1|2|A|1130
6UZ7|1|2|A|1131
6UZ7|1|2|A|1132
6UZ7|1|2|C|1133

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Bn

60S ribosomal protein L41

Chain X

RPS23