IL_6UZ7_062

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUG*UUGAC

Length

9 nucleotides

Bulged bases

6UZ7|1|2|U|1369

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_062 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.297

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

6UZ7|1|2|G|1350
6UZ7|1|2|U|1351
6UZ7|1|2|U|1352
6UZ7|1|2|G|1353
*
6UZ7|1|2|U|1368
6UZ7|1|2|U|1369
6UZ7|1|2|G|1370
6UZ7|1|2|A|1371
6UZ7|1|2|C|1372

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain T

KLLA0A07194p

Chain U

KLLA0F25542p