IL_6UZ7_074

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_074 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1179

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6UZ7|1|2|U|1667
6UZ7|1|2|G|1668
6UZ7|1|2|A|1669
6UZ7|1|2|G|1670
*
6UZ7|1|2|C|1727
6UZ7|1|2|A|1728
6UZ7|1|2|A|1729
6UZ7|1|2|A|1730

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AW

60S ribosomal protein L24

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8