IL_6UZ7_134

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6UZ7|1|5|A|1234

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_134 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.1352

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6UZ7|1|5|G|1233
6UZ7|1|5|A|1234
6UZ7|1|5|G|1235
6UZ7|1|5|U|1236
6UZ7|1|5|G|1237
*
6UZ7|1|5|C|1246
6UZ7|1|5|U|1247
6UZ7|1|5|C|1248

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AK

GDPCP

Chain Br

60S acidic ribosomal protein P0