IL_6UZ7_183

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_183 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.1147

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6UZ7|1|5|G|2791
6UZ7|1|5|G|2792
6UZ7|1|5|C|2793
6UZ7|1|5|U|2794
*
6UZ7|1|5|G|2831
6UZ7|1|5|A|2832
6UZ7|1|5|U|2833
6UZ7|1|5|U|2834
6UZ7|1|5|C|2835

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 1

KLLA0F23265p

Chain AI

KLLA0D05643p

Chain Bb

60S ribosomal protein L29