IL_6UZ7_185

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6UZ7|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_185 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.1272

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6UZ7|1|5|G|2796
6UZ7|1|5|U|2797
6UZ7|1|5|G|2798
*
6UZ7|1|5|U|2826
6UZ7|1|5|U|2827
6UZ7|1|5|U|2828
6UZ7|1|5|U|2829
6UZ7|1|5|U|2830

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 1

KLLA0F23265p

Chain AB

60S ribosomal protein L3

Chain AI

KLLA0D05643p