IL_6UZ7_212

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_212 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.2431

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6UZ7|1|5|A|3310
6UZ7|1|5|G|3311
6UZ7|1|5|A|3312
6UZ7|1|5|G|3313
*
6UZ7|1|5|C|3328
6UZ7|1|5|G|3329
6UZ7|1|5|A|3330
6UZ7|1|5|U|3331

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8