IL_6UZ7_213

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

6UZ7|1|5|U|3322, 6UZ7|1|5|U|3323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_213 not in the Motif Atlas

Homologous match to IL_5TBW_136

Geometric discrepancy: 0.1807

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6UZ7|1|5|C|3317
6UZ7|1|5|C|3318
*
6UZ7|1|5|G|3321
6UZ7|1|5|U|3322
6UZ7|1|5|U|3323
6UZ7|1|5|G|3324

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8