IL_6UZ7_227

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAA*UUU

Length

7 nucleotides

Bulged bases

6UZ7|1|2|G|1149

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_227 not in the Motif Atlas

Geometric match to IL_5AOX_001

Geometric discrepancy: 0.1702

The information below is about IL_5AOX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6UZ7|1|2|G|1148
6UZ7|1|2|G|1149
6UZ7|1|2|A|1150
6UZ7|1|2|A|1151
*
6UZ7|1|2|U|1624
6UZ7|1|2|U|1625
6UZ7|1|2|U|1626

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain a

40S ribosomal protein S26