IL_6UZ7_248

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

6UZ7|1|2|U|259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_248 not in the Motif Atlas

Homologous match to IL_8CRE_403

Geometric discrepancy: 0.351

The information below is about IL_8CRE_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

6UZ7|1|2|G|203
6UZ7|1|2|U|204
6UZ7|1|2|A|205
*
6UZ7|1|2|U|258
6UZ7|1|2|U|259
6UZ7|1|2|U|260
6UZ7|1|2|U|261
6UZ7|1|2|C|262

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain I

40S ribosomal protein S8