3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GGAAGUG*CUCAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V39_006 not in the Motif Atlas
Geometric match to IL_7A0S_006
Geometric discrepancy: 0.114
The information below is about IL_7A0S_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6V39|1|AN1|G|195
6V39|1|AN1|G|196
6V39|1|AN1|A|197
6V39|1|AN1|A|198
6V39|1|AN1|G|199
6V39|1|AN1|U|200
6V39|1|AN1|G|201
*
6V39|1|AN1|C|208
6V39|1|AN1|U|209
6V39|1|AN1|C|210
6V39|1|AN1|A|211
6V39|1|AN1|G|212
6V39|1|AN1|U|213
6V39|1|AN1|A|214
6V39|1|AN1|C|215

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain K
50S ribosomal protein L15
Chain W
50S ribosomal protein L28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0946 s