IL_6V39_007
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- UCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V39_007 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.1016
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6V39|1|AN1|U|246
6V39|1|AN1|C|247
6V39|1|AN1|A|248
6V39|1|AN1|G|249
6V39|1|AN1|U|250
6V39|1|AN1|A|251
6V39|1|AN1|G|252
*
6V39|1|AN1|C|260
6V39|1|AN1|G|261
6V39|1|AN1|A|262
6V39|1|AN1|A|263
6V39|1|AN1|C|264
6V39|1|AN1|G|265
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L35
- Chain K
- 50S ribosomal protein L15
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