IL_6V39_017
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- GAAAC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6V39|1|AN1|G|799, 6V39|1|AN1|G|803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V39_017 not in the Motif Atlas
- Geometric match to IL_5J7L_260
- Geometric discrepancy: 0.1264
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6V39|1|AN1|G|672
6V39|1|AN1|A|673
6V39|1|AN1|A|674
6V39|1|AN1|A|675
6V39|1|AN1|C|676
*
6V39|1|AN1|G|797
6V39|1|AN1|U|798
6V39|1|AN1|G|799
6V39|1|AN1|A|800
6V39|1|AN1|U|801
6V39|1|AN1|A|802
6V39|1|AN1|G|803
6V39|1|AN1|C|804
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain K
- 50S ribosomal protein L15
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