IL_6V39_020

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_020 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.1438

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6V39|1|AN1|U|701
6V39|1|AN1|G|702
6V39|1|AN1|A|703
6V39|1|AN1|A|704
6V39|1|AN1|G|705
*
6V39|1|AN1|U|722
6V39|1|AN1|G|723
6V39|1|AN1|G|724
6V39|1|AN1|A|725
6V39|1|AN1|G|726

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2