IL_6V39_036

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CCCCAAAA*UG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_036 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1002

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6V39|1|AN1|C|1001
6V39|1|AN1|C|1002
6V39|1|AN1|C|1003
6V39|1|AN1|C|1004
6V39|1|AN1|A|1005
6V39|1|AN1|A|1006
6V39|1|AN1|A|1007
6V39|1|AN1|A|1008
*
6V39|1|AN1|U|1148
6V39|1|AN1|G|1149

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L13

Chain P

50S ribosomal protein L20