IL_6V39_040

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_040 not in the Motif Atlas

Geometric match to IL_4WF9_041

Geometric discrepancy: 0.2436

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

6V39|1|AN1|G|1028
6V39|1|AN1|A|1029
6V39|1|AN1|U|1030
6V39|1|AN1|G|1031
*
6V39|1|AN1|C|1118
6V39|1|AN1|G|1119
6V39|1|AN1|C|1120

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain L

50S ribosomal protein L16