IL_6V39_050

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6V39|1|AN1|G|1327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_050 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1657

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6V39|1|AN1|C|1314
6V39|1|AN1|C|1315
6V39|1|AN1|A|1316
6V39|1|AN1|A|1317
6V39|1|AN1|C|1318
*
6V39|1|AN1|G|1326
6V39|1|AN1|G|1327
6V39|1|AN1|G|1328

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L22