IL_6V39_055

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAAG*CAUGC

Length

9 nucleotides

Bulged bases

6V39|1|AN1|U|1557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_055 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2751

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6V39|1|AN1|G|1427
6V39|1|AN1|A|1428
6V39|1|AN1|A|1429
6V39|1|AN1|G|1430
*
6V39|1|AN1|C|1555
6V39|1|AN1|A|1556
6V39|1|AN1|U|1557
6V39|1|AN1|G|1558
6V39|1|AN1|C|1559

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains