IL_6V39_056

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUAA*UGAUG

Length

9 nucleotides

Bulged bases

6V39|1|AN1|U|1552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_056 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0866

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6V39|1|AN1|C|1432
6V39|1|AN1|U|1433
6V39|1|AN1|A|1434
6V39|1|AN1|A|1435
*
6V39|1|AN1|U|1549
6V39|1|AN1|G|1550
6V39|1|AN1|A|1551
6V39|1|AN1|U|1552
6V39|1|AN1|G|1553

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains