IL_6V39_064

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

6V39|1|AN1|G|1988

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_064 not in the Motif Atlas

Geometric match to IL_4WF9_065

Geometric discrepancy: 0.1403

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6V39|1|AN1|A|1667
6V39|1|AN1|C|1668
6V39|1|AN1|U|1669
6V39|1|AN1|A|1670
6V39|1|AN1|G|1671
6V39|1|AN1|G|1672
*
6V39|1|AN1|C|1986
6V39|1|AN1|U|1987
6V39|1|AN1|G|1988
6V39|1|AN1|U|1989

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L14