IL_6V39_068

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6V39|1|AN1|A|1797, 6V39|1|AN1|C|1812, 6V39|1|AN1|U|1816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_068 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1141

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6V39|1|AN1|U|1794
6V39|1|AN1|G|1795
6V39|1|AN1|C|1796
6V39|1|AN1|A|1797
6V39|1|AN1|A|1798
6V39|1|AN1|A|1799
6V39|1|AN1|C|1800
*
6V39|1|AN1|G|1809
6V39|1|AN1|G|1810
6V39|1|AN1|A|1811
6V39|1|AN1|C|1812
6V39|1|AN1|G|1813
6V39|1|AN1|U|1814
6V39|1|AN1|A|1815
6V39|1|AN1|U|1816
6V39|1|AN1|A|1817

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain sN1

Small subunit ribosomal RNA; SSU rRNA