3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GC*GCAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V39_073 not in the Motif Atlas
Geometric match to IL_7A0S_071
Geometric discrepancy: 0.0909
The information below is about IL_7A0S_071
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_22551.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

6V39|1|AN1|G|1929
6V39|1|AN1|C|1930
*
6V39|1|AN1|G|1960
6V39|1|AN1|C|1961
6V39|1|AN1|A|1962
6V39|1|AN1|C|1963

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain v
Transfer RNA; tRNA

Coloring options:


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