IL_6V39_073

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_073 not in the Motif Atlas

Geometric match to IL_7A0S_071

Geometric discrepancy: 0.0909

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6V39|1|AN1|G|1929
6V39|1|AN1|C|1930
*
6V39|1|AN1|G|1960
6V39|1|AN1|C|1961
6V39|1|AN1|A|1962
6V39|1|AN1|C|1963

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain v

Transfer RNA; tRNA