3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UUG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V39_084 not in the Motif Atlas
Geometric match to IL_4KZD_003
Geometric discrepancy: 0.2546
The information below is about IL_4KZD_003
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

6V39|1|AN1|U|2104
6V39|1|AN1|U|2105
6V39|1|AN1|G|2106
*
6V39|1|AN1|C|2175
6V39|1|AN1|U|2176
6V39|1|AN1|G|2177

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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