IL_6V39_097

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6V39|1|AN1|A|2538

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_097 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.1396

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6V39|1|AN1|U|2518
6V39|1|AN1|G|2519
*
6V39|1|AN1|C|2536
6V39|1|AN1|A|2537
6V39|1|AN1|A|2538
6V39|1|AN1|G|2539

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain I

50S ribosomal protein L13