IL_6V39_100
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- UUGAG*CAAGAUAAG
- Length
- 14 nucleotides
- Bulged bases
- 6V39|1|AN1|A|2776
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V39_100 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.108
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6V39|1|AN1|U|2632
6V39|1|AN1|U|2633
6V39|1|AN1|G|2634
6V39|1|AN1|A|2635
6V39|1|AN1|G|2636
*
6V39|1|AN1|C|2770
6V39|1|AN1|A|2771
6V39|1|AN1|A|2772
6V39|1|AN1|G|2773
6V39|1|AN1|A|2774
6V39|1|AN1|U|2775
6V39|1|AN1|A|2776
6V39|1|AN1|A|2777
6V39|1|AN1|G|2778
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain I
- 50S ribosomal protein L13
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