IL_6V39_103

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

6V39|1|AN1|U|2685, 6V39|1|AN1|A|2686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_103 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1065

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6V39|1|AN1|U|2683
6V39|1|AN1|G|2684
6V39|1|AN1|U|2685
6V39|1|AN1|A|2686
6V39|1|AN1|C|2687
*
6V39|1|AN1|G|2714
6V39|1|AN1|G|2715
6V39|1|AN1|U|2716
6V39|1|AN1|A|2717
6V39|1|AN1|G|2718

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L17

Chain O

50S ribosomal protein L19