IL_6V39_105
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- GAUAAC*GGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 6V39|1|AN1|A|2761
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V39_105 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.1198
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6V39|1|AN1|G|2733
6V39|1|AN1|A|2734
6V39|1|AN1|U|2735
6V39|1|AN1|A|2736
6V39|1|AN1|A|2737
6V39|1|AN1|C|2738
*
6V39|1|AN1|G|2758
6V39|1|AN1|G|2759
6V39|1|AN1|A|2760
6V39|1|AN1|A|2761
6V39|1|AN1|G|2762
6V39|1|AN1|C|2763
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain I
- 50S ribosomal protein L13
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