3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
6V39|1|sN1|A|529, 6V39|1|sN1|U|531
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V39_137 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.1939
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6V39|1|sN1|G|512
6V39|1|sN1|PSU|513
6V39|1|sN1|G|514
6V39|1|sN1|C|515
6V39|1|sN1|C|516
6V39|1|sN1|A|517
6V39|1|sN1|G|518
*
6V39|1|sN1|C|525
6V39|1|sN1|G|526
6V39|1|sN1|G|527
6V39|1|sN1|U|528
6V39|1|sN1|A|529
6V39|1|sN1|A|530
6V39|1|sN1|U|531
6V39|1|sN1|A|532
6V39|1|sN1|C|533

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain l
30S ribosomal protein S12

Coloring options:


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