IL_6V39_138

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6V39|1|sN1|A|569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_138 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1315

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6V39|1|sN1|C|566
6V39|1|sN1|G|567
6V39|1|sN1|U|568
6V39|1|sN1|A|569
6V39|1|sN1|A|570
6V39|1|sN1|A|571
6V39|1|sN1|G|572
*
6V39|1|sN1|C|877
6V39|1|sN1|G|878

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17