3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UGG*CUAA
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V39_144 not in the Motif Atlas
Geometric match to IL_4WSM_372
Geometric discrepancy: 0.3872
The information below is about IL_4WSM_372
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09990.4
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6V39|1|sN1|U|656
6V39|1|sN1|G|657
6V39|1|sN1|G|658
*
6V39|1|sN1|C|741
6V39|1|sN1|U|742
6V39|1|sN1|A|743
6V39|1|sN1|A|744

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain f
30S ribosomal protein S6
Chain o
30S ribosomal protein S15

Coloring options:


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