IL_6V39_146
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- AGAAUU*AGGAAU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V39_146 not in the Motif Atlas
- Geometric match to IL_4LFB_030
- Geometric discrepancy: 0.1171
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
6V39|1|sN1|A|670
6V39|1|sN1|G|671
6V39|1|sN1|A|672
6V39|1|sN1|A|673
6V39|1|sN1|U|674
6V39|1|sN1|U|675
*
6V39|1|sN1|A|709
6V39|1|sN1|G|710
6V39|1|sN1|G|711
6V39|1|sN1|A|712
6V39|1|sN1|A|713
6V39|1|sN1|U|714
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain f
- 30S ribosomal protein S6
- Chain k
- 30S ribosomal protein S11
- Chain r
- 30S ribosomal protein S18
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