IL_6V39_150

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_150 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1046

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6V39|1|sN1|G|884
6V39|1|sN1|G|885
6V39|1|sN1|A|886
6V39|1|sN1|G|887
6V39|1|sN1|U|888
6V39|1|sN1|A|889
6V39|1|sN1|C|890
6V39|1|sN1|G|891
*
6V39|1|sN1|U|902
6V39|1|sN1|A|903
6V39|1|sN1|A|904
6V39|1|sN1|A|905
6V39|1|sN1|A|906
6V39|1|sN1|C|907

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12