IL_6V39_153
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 6V39|1|sN1|C|931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V39_153 not in the Motif Atlas
- Homologous match to IL_5J7L_041
- Geometric discrepancy: 0.378
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6V39|1|sN1|G|930
6V39|1|sN1|C|931
6V39|1|sN1|A|932
*
6V39|1|sN1|U|1377
6V39|1|sN1|U|1378
6V39|1|sN1|C|1379
6V39|1|sN1|C|1380
6V39|1|sN1|C|1381
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain v
- Transfer RNA; tRNA
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