IL_6V39_160

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GCUGCAU*AUG(2MG)C

Length

12 nucleotides

Bulged bases

6V39|1|sN1|C|1051

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_160 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3817

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6V39|1|sN1|G|1047
6V39|1|sN1|C|1048
6V39|1|sN1|U|1049
6V39|1|sN1|G|1050
6V39|1|sN1|C|1051
6V39|1|sN1|A|1052
6V39|1|sN1|U|1053
*
6V39|1|sN1|A|1201
6V39|1|sN1|U|1202
6V39|1|sN1|G|1203
6V39|1|sN1|2MG|1204
6V39|1|sN1|C|1205

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14