3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V39_169 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.1678
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

6V39|1|sN1|U|1244
6V39|1|sN1|A|1245
6V39|1|sN1|C|1246
6V39|1|sN1|A|1247
6V39|1|sN1|A|1248
6V39|1|sN1|A|1249
6V39|1|sN1|G|1250
*
6V39|1|sN1|C|1281
6V39|1|sN1|A|1282
6V39|1|sN1|A|1283
6V39|1|sN1|A|1284
6V39|1|sN1|A|1285
6V39|1|sN1|A|1286
6V39|1|sN1|G|1287

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:


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