IL_6V39_171

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUAC*GAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_171 not in the Motif Atlas

Geometric match to IL_4V88_461

Geometric discrepancy: 0.3548

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6V39|1|sN1|C|1256
6V39|1|sN1|U|1257
6V39|1|sN1|A|1258
6V39|1|sN1|C|1259
*
6V39|1|sN1|G|1270
6V39|1|sN1|A|1271
6V39|1|sN1|U|1272
6V39|1|sN1|G|1273

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14