IL_6V39_172

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_172 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1328

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6V39|1|sN1|C|1300
6V39|1|sN1|G|1301
6V39|1|sN1|G|1302
6V39|1|sN1|A|1303
6V39|1|sN1|U|1304
6V39|1|sN1|U|1305
*
6V39|1|sN1|A|1326
6V39|1|sN1|U|1327
6V39|1|sN1|G|1328
6V39|1|sN1|A|1329
6V39|1|sN1|A|1330
6V39|1|sN1|G|1331

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13