IL_6V39_174
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- G(4OC)CC*G(UR3)AAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4OC, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V39_174 not in the Motif Atlas
- Homologous match to IL_5J7L_059
- Geometric discrepancy: 0.0966
- The information below is about IL_5J7L_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.4
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6V39|1|sN1|G|1398
6V39|1|sN1|4OC|1399
6V39|1|sN1|C|1400
6V39|1|sN1|C|1401
*
6V39|1|sN1|G|1494
6V39|1|sN1|UR3|1495
6V39|1|sN1|A|1496
6V39|1|sN1|A|1497
6V39|1|sN1|C|1498
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain v
- Transfer RNA; tRNA
- Chain w
- mRNA 5'-AUG-3'
Coloring options: