IL_6V39_174

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_174 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.0966

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6V39|1|sN1|G|1398
6V39|1|sN1|4OC|1399
6V39|1|sN1|C|1400
6V39|1|sN1|C|1401
*
6V39|1|sN1|G|1494
6V39|1|sN1|UR3|1495
6V39|1|sN1|A|1496
6V39|1|sN1|A|1497
6V39|1|sN1|C|1498

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain v

Transfer RNA; tRNA

Chain w

mRNA 5'-AUG-3'