IL_6V39_198

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGACAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6V39|1|sN1|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_198 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1521

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6V39|1|sN1|G|143
6V39|1|sN1|G|144
6V39|1|sN1|A|145
6V39|1|sN1|C|146
6V39|1|sN1|A|147
6V39|1|sN1|A|148
6V39|1|sN1|C|149
*
6V39|1|sN1|G|164
6V39|1|sN1|C|165
6V39|1|sN1|U|166
6V39|1|sN1|A|167
6V39|1|sN1|A|168
6V39|1|sN1|U|169
6V39|1|sN1|A|170
6V39|1|sN1|C|171

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20