IL_6V3A_006
3D structure
- PDB id
- 6V3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAAGUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V3A_006 not in the Motif Atlas
- Geometric match to IL_7A0S_006
- Geometric discrepancy: 0.1075
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6V3A|1|AN1|G|195
6V3A|1|AN1|G|196
6V3A|1|AN1|A|197
6V3A|1|AN1|A|198
6V3A|1|AN1|G|199
6V3A|1|AN1|U|200
6V3A|1|AN1|G|201
*
6V3A|1|AN1|C|208
6V3A|1|AN1|U|209
6V3A|1|AN1|C|210
6V3A|1|AN1|A|211
6V3A|1|AN1|G|212
6V3A|1|AN1|U|213
6V3A|1|AN1|A|214
6V3A|1|AN1|C|215
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain K
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L28
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