IL_6V3A_039

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_039 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3981

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6V3A|1|AN1|G|1028
6V3A|1|AN1|A|1029
6V3A|1|AN1|U|1030
6V3A|1|AN1|G|1031
*
6V3A|1|AN1|C|1118
6V3A|1|AN1|G|1119
6V3A|1|AN1|C|1120

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain L

50S ribosomal protein L16