IL_6V3A_065

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGAUG*CUGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_065 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.5279

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6V3A|1|AN1|U|1716
6V3A|1|AN1|G|1717
6V3A|1|AN1|A|1718
6V3A|1|AN1|U|1719
6V3A|1|AN1|G|1720
*
6V3A|1|AN1|C|1732
6V3A|1|AN1|U|1733
6V3A|1|AN1|G|1734
6V3A|1|AN1|A|1735
6V3A|1|AN1|G|1736

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains