3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
AGAAUU*AGGAAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V3A_148 not in the Motif Atlas
Homologous match to IL_4LFB_030
Geometric discrepancy: 0.1145
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

6V3A|1|sN1|A|670
6V3A|1|sN1|G|671
6V3A|1|sN1|A|672
6V3A|1|sN1|A|673
6V3A|1|sN1|U|674
6V3A|1|sN1|U|675
*
6V3A|1|sN1|A|709
6V3A|1|sN1|G|710
6V3A|1|sN1|G|711
6V3A|1|sN1|A|712
6V3A|1|sN1|A|713
6V3A|1|sN1|U|714

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain f
30S ribosomal protein S6
Chain k
30S ribosomal protein S11
Chain r
30S ribosomal protein S18
Chain u
30S ribosomal protein S21

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