3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GUUG*CUAAUC
Length
10 nucleotides
Bulged bases
6V3A|1|sN1|U|1254, 6V3A|1|sN1|A|1277
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V3A_172 not in the Motif Atlas
Homologous match to IL_4LFB_052
Geometric discrepancy: 0.2054
The information below is about IL_4LFB_052
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

6V3A|1|sN1|G|1252
6V3A|1|sN1|U|1253
6V3A|1|sN1|U|1254
6V3A|1|sN1|G|1255
*
6V3A|1|sN1|C|1274
6V3A|1|sN1|U|1275
6V3A|1|sN1|A|1276
6V3A|1|sN1|A|1277
6V3A|1|sN1|U|1278
6V3A|1|sN1|C|1279

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:


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