IL_6V3A_201

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUGA*UAA

Length

7 nucleotides

Bulged bases

6V3A|1|sN1|G|33

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_201 not in the Motif Atlas

Geometric match to IL_4YHW_002

Geometric discrepancy: 0.1491

The information below is about IL_4YHW_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6V3A|1|sN1|U|31
6V3A|1|sN1|U|32
6V3A|1|sN1|G|33
6V3A|1|sN1|A|34
*
6V3A|1|sN1|U|549
6V3A|1|sN1|A|550
6V3A|1|sN1|A|551

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12