IL_6V3B_139
3D structure
- PDB id
- 6V3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6V3B|1|sN1|A|529, 6V3B|1|sN1|U|531, 6V3B|1|sN1|A|532
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V3B_139 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1922
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6V3B|1|sN1|G|512
6V3B|1|sN1|PSU|513
6V3B|1|sN1|G|514
6V3B|1|sN1|C|515
6V3B|1|sN1|C|516
6V3B|1|sN1|A|517
6V3B|1|sN1|G|518
*
6V3B|1|sN1|C|525
6V3B|1|sN1|G|526
6V3B|1|sN1|G|527
6V3B|1|sN1|U|528
6V3B|1|sN1|A|529
6V3B|1|sN1|A|530
6V3B|1|sN1|U|531
6V3B|1|sN1|A|532
6V3B|1|sN1|C|533
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain l
- 30S ribosomal protein S12
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