IL_6V3D_020

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3D_020 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.1439

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6V3D|1|AN1|U|701
6V3D|1|AN1|G|702
6V3D|1|AN1|A|703
6V3D|1|AN1|A|704
6V3D|1|AN1|G|705
*
6V3D|1|AN1|U|722
6V3D|1|AN1|G|723
6V3D|1|AN1|G|724
6V3D|1|AN1|A|725
6V3D|1|AN1|G|726

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2