IL_6V3D_047
3D structure
- PDB id
- 6V3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GUGAGUAA*UGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V3D_047 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.1274
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6V3D|1|AN1|G|1257
6V3D|1|AN1|U|1258
6V3D|1|AN1|G|1259
6V3D|1|AN1|A|1260
6V3D|1|AN1|G|1261
6V3D|1|AN1|U|1262
6V3D|1|AN1|A|1263
6V3D|1|AN1|A|1264
*
6V3D|1|AN1|U|2007
6V3D|1|AN1|G|2008
6V3D|1|AN1|A|2009
6V3D|1|AN1|A|2010
6V3D|1|AN1|A|2011
6V3D|1|AN1|U|2012
6V3D|1|AN1|C|2013
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain R
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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