IL_6V3D_108

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUAAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3D_108 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.2009

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

6V3D|1|AN1|C|2802
6V3D|1|AN1|U|2803
6V3D|1|AN1|A|2804
6V3D|1|AN1|A|2805
6V3D|1|AN1|A|2806
6V3D|1|AN1|G|2807
*
6V3D|1|AN1|C|2885
6V3D|1|AN1|G|2886
6V3D|1|AN1|U|2887
6V3D|1|AN1|G|2888

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3