IL_6V3D_115
3D structure
- PDB id
- 6V3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UGAUGGUAG*UGAGAGUAA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V3D_115 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1215
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6V3D|1|B|U|69
6V3D|1|B|G|70
6V3D|1|B|A|71
6V3D|1|B|U|72
6V3D|1|B|G|73
6V3D|1|B|G|74
6V3D|1|B|U|75
6V3D|1|B|A|76
6V3D|1|B|G|77
*
6V3D|1|B|U|94
6V3D|1|B|G|95
6V3D|1|B|A|96
6V3D|1|B|G|97
6V3D|1|B|A|98
6V3D|1|B|G|99
6V3D|1|B|U|100
6V3D|1|B|A|101
6V3D|1|B|A|102
Current chains
- Chain B
- 5s ribosomal RNA
Nearby chains
- Chain AN1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- 50S ribosomal protein L16
- Chain U
- 50S ribosomal protein L25
Coloring options: